Data from: Optimization of the genotyping-by-sequencing strategy for population genomic analysis in conifers

负责人：

关键词：

genotyping-by-sequencing;sequencing depth;SNP validation;library prep parameters;conifer genome;Pinus

DOI：

doi:10.5061/dryad.39gc6

摘要：

and the impact of sequencing depth and size selection of restriction fragments on sequence coverage bias. We tested and compared UNEAK, Stacks and GATK pipelines

Data from: Intra-individual polymorphism in chloroplasts from NGS data: where does it come from and how to handle it?

负责人：

关键词：

GATK;SNP;NGS;heterozygote;Chloroplast;SAMtools

DOI：

doi:10.5061/dryad.31733

摘要：

sequences for inferring phylogeography or phylogeny. Even though the chloroplast is a haploid organelle, NGS plastome data identified a non negligible number of intra