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Data from: The evolutionary origins of hierarchy
负责人:
关键词:
Evolving Hierarchical Solutions;Neural Network Connection Cost and Hierarchy
DOI:
doi:10.5061/dryad.60hp6
摘要:
also tend to cause a hierarchical organization of such modules. In computational simulations, we find that networks without a connection cost
Data from: Sex-dependent expression of behavioural genetic architectures and the evolution of sexual dimorphism
负责人:
关键词:
personality;genetic architecture;gene-by-environment interaction;diet;sexual dimorphism
DOI:
doi:10.5061/dryad.760t1
摘要:
the evolution of sexual dimorphism. Sex-specificity of behavioural genetic architectures have, however, rarely been considered. Moreover, as the expression of genetic
Data from: Hierarchical Hybrid Enrichment: multi-tiered genomic data collection across evolutionary scales, with application to chorus frogs
负责人:
关键词:
data filtering;Anchored Hybrid Enrichment;heat map;phylogenetic robustness;reproductive character displacement;population genomics;contact zone;reinforcement;hybridization;phylogeography
DOI:
doi:10.5061/dryad.0sf2hm8
摘要:
with high efficiency. Using hierarchical data targeting deep and shallow levels, we (a) resolve the phylogeny of the genus Pseudacris and introduce a novel visual
Data from: Two influential primate classifications logically aligned
负责人:
关键词:
reasoning;Primates;Extant;logic;alignment;classification;concept taxonomy;ontology;Region Connection Calculus
DOI:
doi:10.5061/dryad.6jg71
摘要:
ld relationships; (ii) articulation of select concepts across the two hierarchies with user-provided Region Connection Calculus (RCC-5) relationships; and (iii
Data from: Genetic redundancy fuels polygenic adaptation in Drosophila
负责人:
关键词:
drosophila simulans;genetic redundancy;laboratory natural selection;Quantitative trait;polygenic adaptation
DOI:
doi:10.5061/dryad.rr137kn
摘要:
w temperature regime and uncovered a polygenic architecture of an adaptive trait with high genetic redundancy among beneficial alleles. We observed convergent respons
Data from: When homoplasy is not homoplasy: dissecting trait evolution by contrasting composite and reductive coding
负责人:
关键词:
Drupes;Simple characters;Complex characters;character evolution;Rubiaceae;Homoplasy;Fruit evolution
DOI:
doi:10.5061/dryad.472s0
摘要:
o simpler hierarchical characters (reductive coding), although the implied hierarchical relational information may change depending on the type of coding
Data from: The effects of model choice and mitigating bias on the ribosomal tree of life
负责人:
关键词:
Trichoplax adhaerens;Cyanophora paradoxa;Desulfurispirillum indicum;Chlamydomonas reinhardtii;Bigelowiella natans;Cenarchaeum symbiosum;Cryptosporidium muris;Zymomonas mobilis;Nitrosoarchaeum limnia;Lactobacillus fermentum;Aspergillus flavus;Oscillibacter valericigenes;Arachnula sp;Archaeoglobus fulgidus;single-matrix model;Thermoplasma acidophilum;Paenibacillus sp;Perkinsus marinus;Corynebacterium pseudotuberculosis;Natromonas pharaonis;Staphylothermus marinus;two-domain tree;Diplonema sp;Prevotella denticola;Cyanothece sp;Ribosomal tree of life;Candida albicans;Anaerolinea thermophila;Methanocaldococcus jannaschii;Phaeodactylum tricornutum;Methylacidiphilum infernorum;Methanosarcina mazei;Dictyostelium discoideum;Chlorobium limicola;Thermotoga maritima;Methanosphaera stadtmanae;Babesia bovis;Thermodesulfatator indicus;Thermovibrio ammonificans;Flamella sp;Korarchaeum cryptofilum;Syntrophus aciditrophicus;Methanobrevibacter smithii;Deinococcus deserti;Gemmatimonas aurantiaca;Dyadobacter fermentans;Methanococcus aeolicus;Tribonema sp;Toxoplasma gondii;Acetobacter pasteurianus;Methanococcoides burtonii;Leishmania major;Thalassiosira pseudonana;Aeropyrum pernix;Nitrosomonas europaea;mixture model;Thermococcus kodakarensis;Arabidopsis thaliana;Apis mellifera;Nitrosopumilis sp;Halobacterium salinarum;Acidilobus saccharovorans;Pyrobaculum aerophilium;Fibrobacter succinogenes;Acanthamoeba sp;Idiomarina loihiensis;Ciona intestinalis;Meiothermus silvanus;Thermocrinis albus;Neisseria meningitidis;Spirochaeta coccoides;Methanopyrus kandleri;Xylella fastidiosa;Bodo sp;Ignicoccus hospitalis;Physarum polycephalum;Desulfurococcus mucosus;Danio rerio;Compositional heterogeneity;Treponema brennaborense;Sulfolobus solfataricus;Hypterthermus butylicus;Picrophilus torridus;Plasmodium vivax;Denitrovibrio acetiphilus;Haloarcula marismortui;three-domain tree;Metallosphaera sedula;Phytophthora infestans;Planctomyces brasiliensis;Thermovirga lienii;Trypanosoma brucei;Dictyoglomus thermophilum;Cryptobacterium curtum;Trimastix pyriformis;Cryptococcus gattii;Dehalococcoides ethenogenes;Pyrolobus fumarii;Guillardia theta;Methanoculleus marisingri;Thermus scotoductus;Syntrophothermus lipocalidus;Coraliomargarita akajimensis;Desulfobacca acetoxidans;Nitrosospira multiformis;Heterosigma sp;Prochlorococcus marinus;Fusobacterium nucleatum;Rhodopirellula baltica;Emiliana huxleyi;Nanoarchaeum equitans;Pyrococcus horikoshii;Ostreococcus tauri;Euglena sp
DOI:
doi:10.5061/dryad.7785h
摘要:
Deep-level relationships within Bacteria, Archaea, and Eukarya as well as the relationships of these three domains to each other require resolution
Data from: SimPhy: phylogenomic simulation of gene, locus and species trees
负责人:
关键词:
Multilocus Coalescent;Species tree;gene family evolution;Multispecies coalescent;incomplete lineage sorting;Simulation;substitution rate;Gene duplication and loss;gene conversion;Locus tree;Horizontal gene transfer
DOI:
doi:10.5061/dryad.707td
摘要:
a hierarchical phylogenetic model in which the evolution of species, locus, and gene trees is governed by global and local parameters (e.g., genome-wide, species

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