Data from: Mining for single nucleotide polymorphisms and insertions / deletions in expressed sequence tag libraries of oil palm

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关键词：

Elaeis oleifera;Shannon index;in silico;Elaeis guineensis;molecular markers

DOI：

doi:10.5061/dryad.157

摘要：

tion / deletion) has led to a revolution in their use as molecular markers. Available (5452) Oil palm EST sequences were mined from dbEST of NCBI. CAP3 progra

Data from: Resolving relationships within the palm subfamily Arecoideae (Arecaceae) using next-gen derived plastid sequences

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关键词：

Orania palindan;Areceae;Podococcus barteri;Pelagodoxeae;Pseudophoenix vinifera;Sclerosperma profizianum;Hydriastele microspadix;Podococceae;oil palm;Roystoneeae;Phoenix dactylifera;Kentiopsis piersoniorum;Oenocarpus bataua;Satakentia liukiuensis;Leopoldinieae;Calamus caryotoides;Drymophloeus litigiosus;Manicarieae;Geonoma undata subsp. dussiana;Reinhardtia gracilis;Euterpeae;Bismarckia nobilis;Heterospathe cagayanensis;Coryphoideae;Geonomateae;Ceroxyleae;Calameae;Leopoldinia pulchra;Sclerospermeae;Reinhardtieae;Dypsis decaryi;Ceroxyloideae;Attalea speciosa;mid-Eocene;Veitchia spiralis;present day;Elaeis oleifera;Burretiokentia grandiflora;Chamaedorea seifrizii;Pelagodoxa henryana;Phoeniceae;Reinhardtia paiewonskiana;Borasseae;Cyclospatheae;Oenocarpus minor;Roystonea regia;phylogenetics;Calamoideae;Chamaedoreeae;Manicaria saccifera;Next-generation sequencing;Arecaceae;Reinhardtia simplex;Cocoseae;Iriartea deltoidea;Ravenea hildebrandtii;gene capture;Dictyosperma album;Beccariophoenix madagascariensis;Arecoideae;Reinhardtia latisecta;Oranieae;Iriarteeae;Prestoea acuminata var. montana;Bactris major;Areca vestiaria

DOI：

doi:10.5061/dryad.4tn05

摘要：

Premise of the study: Several studies have incorporated molecular and morphological data to study the phylogeny of the palms (Arecaceae), but som

Data from: A synthesis of animal-mediated seed dispersal of palms reveals distinct biogeographic differences in species interactions

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关键词：

Caluromys philander;Myloplus rubripinnis;Ateles paniscus;Eulemur macaco;Astrocaryum standleyanum;Hyphaene compressa;Tachyphonus coronatus;Phoenix dactylifera;Rhinemys rufipes;Raphia vinifera;Sciurus spadiceus;Pionites leucogaster;Phytelephas macrocarpa;Bactris riparia;Nasua nasua;Dasyprocta azarae;Pseudophoenix sargentii;Eltonian shortfall;Deckenia nobilis;Dasyprocta prymnolopha;Selenidera piperivora;Didelphis albiventris;Ramphastos sulfuratus;Acridotheres tristis;Orthogonys chloricterus;Ortalis canicollis;Bos primigenius;Acrocomia aculeata;Papio ursinus;Geonoma polyandra;Procnias nudicollis;Borassus aethiopum;Eremospatha wendlandiana;Psophia crepitans;Rhea americana;Myloplus;Brycon amazonicus;Zosterops capensis;Attalea rostrata;Sciurus granatensis;Pholidostachys pulchra;Dasyprocta fuliginosa;Astrocaryum gynacanthum;Treron australis;Bycanistes albotibialis;Leontopithecus chrysopygus;Cyanocorax cristatellus;Microcebus murinus;Phoenix reclinata;Elaeis guineensis;Eidolon helvum;Manicaria saccifera;multispecies interactions;Syagrus petraea;Arecaceae;Chelonoidis carbonaria;Butia yatay;Procyon lotor;frugivore;Hapalemur griseus;Triportheus angulatus;Chamaedorea elegans;Thraupis palmarum;Amazona ochrocephala;Coendou bicolor;functional trait matching;Polyboroides typus;Syagrus ruschiana;Body Size;Dendrocygna bicolor;Anthreptes collaris;Nectomys squamipes;Pitangus sulphuratus;Bactris setulosa;Ara glaucogularis;Handleyomys alfaroi;Cercopithecus nictitans;Rhamdia schomburgkii;Lycalopex gymnocercus;Bactris maraja;Hyphaene thebaica;Cheirogaleus medius;Dypsis prestoniana;Hapalemur occidentalis;Sciurus aestuans;Primolius auricollis;Proechimys pattoni;Leporinus friederici;Allagoptera campestris;Thraupis sayaca;Colossoma bidens;Dypsis decaryi;Puma concolor;Aotus brumbacki;Sapajus nigritus;Crinifer piscator;Heteromys desmarestianus;Ursus americanus;Saguinus geoffroyi;Coendou prehensilis;Aphandra natalia;Prestoea decurrens;Tapirus terrestris;Hylaeamys megacephalus;Philander frenatus;Parula pitiayumi;Ateuchus squalidus;Psarocolius montezuma;Cerradomys subflavus;Astrocaryum confertum;Bactris mexicana;Alectroenas madagascariensis;Loxodonta africana;Astrocaryum paramaca;Proechimys brevicauda;Astrocaryum vulgare;Steatornis caripensis;Myoprocta acouchy;Beccariophoenix madagascariensis;Aratinga euops;Brycon falcatus;Ateles geoffroyi;Cyclarhis gujanensis;Metynnis;Attalea microcarpa;Euphonia pectoralis;Sciurus ignitus;Saltator similis;Allagoptera arenaria;Dasyprocta punctata;Triportheus culter;Psittacus erithacus;Leptorinus;Podocnemis expansa;Pteroglossus bailloni;Mimus polyglottos;Copernicia alba;Astrocaryum aculeatissimum;Brotogeris chiriri;Alouatta seniculus;Euphractus sexcinctus;Cephalophus dorsalis;Pteroglossus viridis;Amazona ventralis;Welfia regia;Amazona farinosa;Mazama nemorivaga;Turdus amaurochalinus;Penelope superciliaris;Chrysocyon brachyurus;Milvus migrans;Bactris glaucescens;Trinomys eliasi;Attalea geraensis;Ravenea sambiranensis;Peltocephalus dumerilianus;Syagrus romanzoffiana;Papio anubis;Calamus deerratus;Pipile cujubi;Margarops fuscatus;Eulemur fulvus;Pionus fuscus;Syagrus oleracea;Myleus rhomboidalis;Tinamus solitarius;Bactris hirta;Sarcoramphus papa;Phoenix sylvestris;Attalea speciosa;Potamocarcinus richmondi;Anodorhynchus glauca;Iriartella setigera;Cuniculus paca;Ortalis vetula;Civettictis civetta;Papio papio;Penelope obscura;Deroptyus accipitrinus;Tauraco corythaix;Sciurus ingrami;Marmosa robinsoni;Artibeus lituratus;Coracopsis nigra;Nasua narica;Tauraco persa;Celeus flavescens;Euryoryzomys russatus;Astrocaryum jauari;Anodorhynchus hyacinthinus;Melanerpes candidus;Acoelorrhaphe wrightii;Frugivory;Euterpe precatoria;Eidolon dupreanum;Hyphaene petersiana;biotic interactions;Sciurus deppei;Dacnis cayana;Monodelphis americana;Triportheus;Dypsis pinnatifrons;Gnorimopsar chopi;Turdus nigriceps;Raphia taedigera;Liomys salvini;Bactris acanthocarpa;Attalea attaleoides;Cacajao melanocephalus;Attalea butyracea;Turdus albicollis;Tangara cayana;fruit;Brycon;Ramphocelus bresilius;Serrasalmus manueli;Dendrocygna arborea;Ateles chamek;Butia capitata;Raphia sudanica;Thraupis ornata;palms;Lemur catta;Megalechis thoracata;Ramphastos cuvieri;Anthropocene;Saltator albicollis;Proechimys simonsi;Bactris pilosa;Iriartea deltoidea;Patagioenas leucocephala;animal-mediated seed dispersal;Cebus kaapori;Mauritia flexuosa;megafauna;Ramphastos dicolorus;Amazona amazonica;Semaprochilodus;Brycon hilarii;Sturnus contra;Turdus leucomelas;Lophocebus albigena;Pteropus rufus;Archontophoenix cunninghamiana;Pionus maximiliani;Ramphastos swainsonii;Laccosperma secundiflorum;Trogon viridis;Mauritiella aculeata;Eremospatha cabrae;Proechimys semispinosus;Priodontes maximus;Roystonea borinquena;Thrinax radiata;Canis latrans;Bactris setosa;Lithodoras dorsalis;Makalata didelphoides;Attalea oleifera;Zenaida auriculata;Potos flavus;Pimelodella;Astrocaryum sciophilum;Dypsis ampasindavae;Patagioenas inornata;Myoprocta pratti;Cyanocorax cyanopogon;Chamaedorea tepejilote;Saimiri boliviensis;Oenocarpus mapora;Turdus rufiventris;Electrophorus electricus;Sciurus sanborni;Pyroderus scutatus;Proechimys longicaudatus;Tayassu pecari;Crax rubra;Sciurillus pusillus;species traits;Nandayus nenday;Spindalis zena;Pecari tajacu;Dasypus novemcinctus;Colossoma macropomum;Didelphis marsupialis;Sciurus pyrrhinus;Clyomys bishopi;Pipile jacutinga;Lamprotornis corruscus;Sigmodon hispidus;Brycon bicolor;Cebus capucinus;Caluromys derbianus;Ortalis ruficauda;Paulicea lutkeni;Allagoptera caudescens;Myloplus torquatus;Rupicola rupicola;Ateles belzebuth;Pyrrhura frontalis;Callicebus ornatus;Penelope purpurascens;Verschaffeltia splendida;Eremospatha macrocarpa;Piaractus mesopotamicus;Leopardus pardalis;Callithrix penicillata;Desmoncus polycanthos;Urocyon cinereoargenteus;Tangara seledon;Sapajus apella;Bactris bidentula;Loxigilla noctis;Brotogeris versicolurus;Megalodoras uranoscopus;Leopoldinia pulchra;Ara militaris;Psophia leucoptera;Astrocaryum chambira;Astrocaryum mexicanum;Bassaricyon gabbii;Dypsis madagascariensis;Crax daubentoni;Tangara cyanoptera;Serrasalmus;Baryphthengus ruficapillus;Didelphis aurita;Peromyscus mexicanus;Turdus olivaceus;Pteroglossus aracari;Chelonoidis denticulata;Trinomys iheringi;Mazama gouazoubira;Roystonea regia;Geonoma schottiana;Schistochlamys melanopis;Alouatta guariba;Ara ararauna;Procyon cancrivorus;Roystonea oleracea;Mazama americana;Myiopsitta monachus;Ploceus cucullatus;Phoenicophorium borsigianum;Pan troglodytes;Raphia monbuttorum;Papio hamadryas;Astrocaryum macrocalyx;Tyrannus dominicensis;Geonoma pauciflora;Patagioenas squamosa;Piaractus brachypomus;Cheirogaleus major;Philander opossum;Tocantisia piresi;Poicephalus gulielmi;Attalea phalerata;Hyphaene coriacea;Cocos nucifera;Lemurophoenix halleuxii;Astrocaryum aculeatum;Thraupis episcopus;Oxydoras niger;Copernicia tectorum;Ara chloropterus;Amazona brasiliensis;Cerdocyon thous;Proechimys guyannensis;Cryosophila stauracantha;Sciurus variegatoides;Turdus plumbeus;Cephalophus callipygus;Proechimys;Alouatta palliata;Ramphastos vitellinus;Perissocephalus tricolor;Ploceus ocularis;Ramphastos tucanus;Dasyprocta leporina;Sciurus aureogaster;Ortalis guttata;Attalea cohune;Oxysternon festivum;Ara severus;Lagothrix lagotricha;Dypsis nodifera;Selenidera maculirostris;Chiroxiphia caudata;Syagrus pseudococos;Rhinoclemys punctularia;Gypohierax angolensis;Sabal palmetto;Euterpe catinga;Microsciurus mimulus;Proechimys steerei;Cercocebus galeritus;Aiphanes horrida;Proechimys cuvieri;Callicebus torquatus;Tangara cyanocephala;Pimelodus maculatus;Proechymis;Penelope marail;Cyanocorax affinis;Attalea maripa;Phractocephalus hemiliopterus;Euterpe oleracea;Hylaeamys oniscus;Sigmodon alstoni;Tapirus bairdii;Brycon melanopterus;Serrasalmus rhombeus;Pithecia albicans;Ramphastos toco;Oenocarpus bacaba;Andropadus importunus;Turdus migratorius;Caracara plancus;mutualism;Eira barbara;Geonoma elegans;Pterodoras granulosus;Myiodynastes maculatus;Geonoma stricta;Sabal mexicana;Triclaria malachitacea;Pogoniulus bilineatus;Amazona aestiva;Rousettus angolensis;Astrocaryum alatum;Salvator merianae;Bycanistes cylindricus;Coccothrinax argentata;Bycanistes fistulator;Penelope jacquacu;Oenocarpus bataua;Hypsipetes madagascariensis;Odocoileus virginianus;Tolypeutes matacus;Gaussia maya;Daubentonia madagascariensis;Cephalopterus penduliger;Lepilemur dorsalis;Manacus manacus;Euphonia violacea;Pionites melanocephalus;Papio cynocephalus;Myloplus asterias;Coereba flaveola;Attalea humilis;Astrocaryum gratum;Ceratogymna atrata;Data sharing;Pycnonotus barbatus;Coracopsis vasa;Poicephalus meyeri;Bactris gasipaes;Elaeis oleifera;Saimiri sciureus;Euterpe edulis;Gorilla gorilla;Cyanocorax caeruleus;Bombycilla cedrorum;Lipaugus lanioides;ecological networks;Melanerpes portoricensis;Tityra cayana;Attalea funifera;Socratea exorrhiza;Sciurus igniventris;Metachirus nudicaudatus;Sturnus pagodarum;Dermanura watsoni;Carpornis cucullata;Phytelephas seemannii;Myleus;Turdus flavipes;Astrocaryum murumuru;Syagrus coronata;Brotogeris tirica;Coccothrinax readii;Orthopsittaca manilata;Heteromys anomalus

DOI：

doi:10.5061/dryad.rd46vq3

摘要：

(i.e. the relationship between palm fruit size and frugivore body size) differs between regions. Results: A total of 750 unique pairwise interaction records were retrieved