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Data from: A new hierarchy of phylogenetic models consistent with heterogeneous substitution rates
- 负责人：
- DOI：
- doi:10.5061/dryad.461g6
- 摘要：
- of DNA substitutions regardless of taxon sampling. Some well-known models in popular use are within this class, but are either overly simplistic (e.g., the Kimura
Data from: Assessing the performance of DNA barcoding using posterior predictive simulations
- 负责人：
- DOI：
- doi:10.5061/dryad.pg470
- 摘要：
- the Barcode of Life Database and posterior predictive simulations to assess the performance of DNA barcoding under commonly used substitution models
Data from: Kakusan4 and Aminosan: two programs for comparing nonpartitioned, proportional, and separate models for combined mo
- 负责人：
- DOI：
- doi:10.5061/dryad.8646
- 摘要：
- e frequently used in phylogenetic studies of multilocus data. However, the selection from among nonpartitioned (i.e., a common combination of models is appli
Data from: Markovian language model of the DNA and its information content
- 负责人：
- DOI：
- doi:10.5061/dryad.4gt8g
- 摘要：
- This work proposes a Markovian memoryless model for the DNA that simplifies enormously the complexity of it. We encode nucleotide sequences int
Data from: Using occupancy modeling to compare environmental DNA to traditional field methods for regional-scale monitoring of an endangered
- 负责人：
- DOI：
- doi:10.5061/dryad.6rs23
- 摘要：
- for eDNA analysis were taken, ranging from two to 23 samples per site, depending upon habitat size. Analysis using a multi-method occupancy modeling
Data from: Phylogenetic ANOVA: the Expression Variance and Evolution model for quantitative trait evolution
- 负责人：
- 关键词：
- Ornstein-Uhlenbeck model;Plasticity;expression adaptation;population variance;comparative expression
- DOI：
- doi:10.5061/dryad.r122k
- 摘要：
- A number of methods have been developed for modeling the evolution of a quantitative trait on a phylogeny. These methods have received renewed int
Data from: Differential chromosome conformations as hallmarks of cellular identity revealed by mathematical polymer modeling
- 负责人：
- DOI：
- doi:10.5061/dryad.rp3g3
- 摘要：
- Inherently dynamic, chromosomes adopt many different conformations in response to DNA metabolism. Models of chromosome organization in the yeast
Data from: Evf2 lncRNA/BRG1/DLX1 interactions reveal RNA-dependent inhibition of chromatin remodeling
- 负责人：
- DOI：
- doi:10.5061/dryad.82gn0
- 摘要：
- directly interacts with DLX1 and Evf2 through distinct binding sites, Evf2 directly inhibits BRG1 ATPase and chromatin remodeling activities
Data from: A new model for ancient DNA decay based on paleogenomic meta-analysis
- 负责人：
- DOI：
- doi:10.5061/dryad.5r10j
- 摘要：
- r the timespans analyzed, even when controlling for environmental variables. We propose a model for ancient DNA decay wherein fragmentation rapidly reaches
Data from: A partitioned likelihood analysis of swallowtail butterfly phylogeny (Lepidoptera: Papilionidae)
- 负责人：
- DOI：
- doi:10.5061/dryad.615
- 摘要：
- several partitioned and unpartitioned likelihood models. Partitioned models gave significantly better fits to the data than did unpartitioned models
