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Data from: Mitochondrial phylogenomics of early land plants: mitigating the effects of saturation, compositional heterogeneity, and codon-usage bias
负责人:
关键词:
composition heterogeneity;Early land plants;synonymous codon-usage bias;evolutionary saturation;mitochondrial genome;phylogenomics
DOI:
doi:10.5061/dryad.7b470
摘要:
-based trees is caused by the lineage specific, parallel compositional bias, or synonymous mutations driving codon-usage bias, as well as saturati
Data from: Support for a clade of Placozoa and Cnidaria in genes with minimal compositional bias
负责人:
Laumer, Christopher
关键词:
Phylogeny Compositional heterogeneity
DOI:
doi:10.5061/dryad.6cm1166
摘要:
to construct the matrix. We demonstrate that a majority of genes show evidence of compositional heterogeneity, and that support for the Cnidaria+Bilateria clade
Data from: Phylogenomics of Lophotrochozoa with consideration of systematic error
负责人:
关键词:
Trochozoa Spiralia Mollusca Nemertea Annelida Brachiopoda Phoronida Entoprocta Bryozoa Platyzoa
DOI:
doi:10.5061/dryad.30k4v.1
摘要:
heterogeneity, evolutionary rate, percent missing data, compositional bias, and saturation for each OG and analyzed increasingly stricter subsets of only the mos
Data from: Towards accurate species-level metabarcoding of arthropod communities from the tropical forest canopy
负责人:
关键词:
species diversity;Metabarcoding;Taxon composition;Body Size;Arthropoda;Arthropods;Sequencing bias;Compositionality
DOI:
doi:10.5061/dryad.120f446
摘要:
mismatches. Considerable compositional variation within size and taxon-based subcommunities were evident resulting in high beta diversity among samples from
Data from: Connectivity explains local ant community structure in a Neotropical forest canopy: a large-scale experimental approach
负责人:
关键词:
Formicidae;Community Ecology;Tropical Forest
DOI:
doi:10.5061/dryad.302bd95
摘要:
of arboreal ants, with a compositional bias toward elevating the density of broad-ranging specialist predators.
Data from: Seawater environmental DNA reflects seasonality of a coastal fish community
负责人:
关键词:
DOI:
doi:10.5061/dryad.r5r20
摘要:
d Illumina sequencing of PCR products to demonstrate that seawater eDNA showed compositional changes in accordance with seasonal changes in the fish community. The vast
Data from: A critical appraisal of the placement of Xiphosura (Chelicerata) with account of known sources of phylogenetic error
负责人:
关键词:
Arachnids;ILS;Long branch attraction;Arthropods;composition bias;signal
DOI:
doi:10.5061/dryad.2g1f4n5
摘要:
t the placement of horseshoe crabs can not be explained by missing data, compositional biases, saturation, or incomplete lineage sorting. Interrogati
Data from: Phylogenomics of Lophotrochozoa with consideration of systematic error
负责人:
关键词:
Rhyssoplax olivaceus;Lineus lacteus;Novocrania anomala;Boccardia proboscidea;Clymenella torquata;Glottidia pyramidata;Phascolosoma agassizii;saturation;Patella vulgata;Adineta vaga;Leptochiton asellus;Megadasys sp.;Spathoderma clenchi;Schistosoma mansoni;Platyzoa;Brachionus plicatilis;Loxosoma pectinaricola;Paranemertes peregrina;Phenacolepas pulchella;Taenia pisiformis;Ruditapes philippinarum;Sepioteuthis lessoniana;Macellomenia schanderi;Capitella teleta;Phoronis vancouverensis;Pomatoceros lamarckii;Alexandromenia crassa;Prochaetoderma californicum;Entalina tetragona;Symbion americanus;Spiralia;Neomenia carinata;Dosidicus gigas;Alitta virens;Tubulanus polymorphus-Halanych;Nemertea;Cephalothrix linearis;Mollusca;drosophila melanogaster;Laqueus californicus;Crassostrea gigas;Laevipilina hyalina;Macrodasys sp.;Phoronida;Aplysia californica;Mytilus edulis;Hemithiris psittacea;Bryozoa;Pectinaria gouldii;Octopus vulgaris;Brachiopoda;Compositional heterogeneity;Lineus longissimus;Gnathostomula paradoxa;Leptochiton rugatus;Graptacme eborea;Cephalothrix hongkongensis;Lottia gigantea;Nuculana pernula;Helobdella robusta;Priapulus caudatus;Daphnia pulex;Barentsia gracilis;Trochozoa;Malacobdella grossa;Enucula tenuis;Loxosomella cf. vivipara;Crepidula fornicata;Haliotis rufescens;Polyzoa;Nucella lapillus;Pedicellina cernua;Sagitta sp.;Tubulanus polymorphus-Struck;Annelida;Gadila tolmiei;Cerebratulus marginatus;Entoprocta;Villosa lienosa;Bugula neritina;Glycera dibranchiata;Lineus ruber;Sepia esculenta;Solemya velum;Long branch attraction;Schmidtea mediterranea;Pinctada fucata;Phoronis psammophila
DOI:
doi:10.5061/dryad.30k4v
摘要:
heterogeneity, evolutionary rate, percent missing data, compositional bias, and saturation for each OG and analyzed increasingly stricter subsets of only the mos
Data from: Deep mitochondrial origin outside the sampled alphaproteobacteria
负责人:
关键词:
Alphaproteobacteria;metagenomics;Mitochondria;Binning;Evolution;phylogenomics
DOI:
doi:10.5061/dryad.068d0d0
摘要:
l Alphaproteobacteria. Subsequent phylogenomic analyses that specifically address long branch attraction and compositional bias artefacts suggest that mitochondria di
Data from: Phylogeny of Trichoptera (caddisflies): characterization of signal and noise within multiple datasets
负责人:
关键词:
dataset combination;Annulipalpia;Integripalpia;pseudoreplicate reweighting;Spicipalpia;Bayesian inference;Homoplasy
DOI:
doi:10.5061/dryad.694
摘要:
me, and estimating nucleotide compositional bias. All these measures cast doubt on the reliability of the deep-level signal coming from the nucleotides of the COI

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