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Data from: Development of genomic resources for the tick Ixodes ricinus: isolation and characterization of single nucleotide polymorphisms
- 负责人：
- DOI：
- doi:10.5061/dryad.1h1f2
- 摘要：
- complexity reduction step, followed by pyrosequencing and the use new bioinformatics tools. Almost 1.4 million reads (average length : 528 nt) were gene
Data from: Genome assembly and annotation of a Drosophila simulans strain from Madagascar
- 负责人：
- DOI：
- doi:10.5061/dryad.ng95t
- 摘要：
- Drosophila simulans is a closely relative of the genetic model D. melanogaster. In an effort to improve the genomic resources for D. simulans
Data from: Special features of RAD Sequencing data: implications for genotyping
- 负责人：
- DOI：
- doi:10.5061/dryad.218p2
- 摘要：
- , RAD-Seq produces stochastic count data and requires sensitive analysis to develop or genotype markers accurately. We show that there are several sources
Data from: Parallel tagged amplicon sequencing reveals major lineages and phylogenetic structure in the North American tiger salama
- 负责人：
- DOI：
- doi:10.5061/dryad.03s86
- 摘要：
- , identifies high-quality variable nucleotides, and yields phased haplotype sequences for each individual at each locus. Our sequencing and bioinformatic
Data from: Evidence that hepatitis C virus genome partly controls infection outcome
- 负责人：
- DOI：
- doi:10.5061/dryad.3978f
- 摘要：
- phylogenetic approaches previously developed to estimate the virus control over set-point viral load in HIV-1 infections, we simulate inheritance of a bi
Data from: The summary-likelihood method and its implementation in the Infusion package
- 负责人：
- 关键词：
- phylogeography;Bioinfomatics\/Phyloinfomatics;Population Genetics - Empirical;population dynamics
- DOI：
- doi:10.5061/dryad.4gh7b
- 摘要：
- on retained in the summary statistics whose distribution is simulated. We provide an automated implementation as a standard R package, Infusion, and we test
Data from: AftrRAD: a pipeline for accurate and efficient de novo assembly of RADseq data
- 负责人：
- DOI：
- doi:10.5061/dryad.sn034
- 摘要：
- of novel bioinformatic tools that aid in the generation and analysis of these data. Here, we report the availability of AftrRAD, a bioinformatic pipeline
Data from: Exon capture phylogenomics: efficacy across scales of divergence
- 负责人：
- DOI：
- doi:10.5061/dryad.34274
- 摘要：
- The evolutionary histories of species are not measured directly, but estimated using genealogies inferred for particular loci. Individual loci
Data from: Seasonal diversity and dynamics of haptophytes in the Skagerrak, Norway, explored by high-throughput sequencing
- 负责人：
- DOI：
- doi:10.5061/dryad.b8d21
- 摘要：
- operational taxonomic units (OTUs), from c. 400.000 454 pyrosequencing reads, after rigorous bioinformatic filtering and clustering at 99.5%. Most OTUs represented uncultured
Data from: Detection of individual ploidy levels with genotyping-by-sequencing (GBS) analysis
- 负责人：
- DOI：
- doi:10.5061/dryad.5vs40
- 摘要：
- s the method does not require prior information on ploidy, a reference set of samples with known ploidy can be included in the analysis if it is availab
