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Data from: The multispecies coalescent model outperforms concatenation across diverse phylogenomic
负责人:
关键词:
Bayesian model validation;coalescent prior;congruent gene trees;independent prior;Bayes factor;Athens;posterior predictive simulation;Metazoa
DOI:
doi:10.5061/dryad.7q6q3s0
摘要:
invertebrates). In contrast, Bayesian model validation and comparison analyses conducted even on data sets reduced for computational efficiency suggest that, amo
Data from: Recommendations for using msBayes to incorporate uncertainty in selecting an ABC model prior: a response to Oaks et al.
负责人:
关键词:
prior;msBayes;Bayesian model averaging;synchronous divergence;approximate Bayesian computation
DOI:
doi:10.5061/dryad.17f8v
摘要:
Prior specification is an essential component of parameter estimation and model comparison in Approximate Bayesian computation (ABC). Oaks et al. pr
Data from: Posterior predictive Bayesian phylogenetic model selection
负责人:
关键词:
posterior predictive;Bayesian;model selection;phylogenetics;L-measure;conditional predictive ordinate;log pseudomarginal likelihood
DOI:
doi:10.5061/dryad.6b7c1
摘要:
by the marginal likelihood (including Bayes Factor comparisons) based solely on the fit of competing models to observed data.
Data from: A rapid and scalable method for multilocus species delimitation using Bayesian model comparison and rooted triplets
负责人:
关键词:
Bayesian model comparison;Bacterial species;Bacillus;Multilocus species delimitation;Dynamic programming;present
DOI:
doi:10.5061/dryad.3cb25
摘要:
by the multispecies coalescent. A Bayesian model comparison framework was developed and the best delimitation found by comparing the product of posterior probabilities of al
Data from: Human visual exploration reduces uncertainty about the sensed world
负责人:
关键词:
salience;working memory;Bayesian;attention;active inference
DOI:
doi:10.5061/dryad.ph104
摘要:
d Bayesian model comparison to compare Markov decision process (MDP) models of scan-paths that did - and did not - contain the epistemic, uncertainty-resolving imperatives
Data from: Exploring the power of Bayesian birth-death skyline models to detect mass extinction events from phylogenies with only extant taxa
负责人:
关键词:
extinction;mass extinction events;Bayesian inference;Diversification rates;speciation;episodic birth-death
DOI:
doi:10.5061/dryad.qv10c62
摘要:
with the single-pulse Bayesian model, CoMET, showed a similar frequency of Type II error and neither model exhibited Type I error. However, while CoMET performed
Data from: ModelOMatic: fast and automated comparison between RY, nucleotide, amino acid, and codon substitution models
负责人:
关键词:
model selection;phylogenetics;substitution models;AIC
DOI:
doi:10.5061/dryad.gq0pb
摘要:
, amino acids, or codons. A major limitation of existing model selection approaches is that they can only compare models acting upon a single type of data. Her
Data from: Approximate Bayesian computation analysis of EST-associated microsatellites indicates that the broadleaved evergreen tree Castanopsi
负责人:
关键词:
glacial refugia;Late Pleistocene;Castanopsis sieboldii;Demography;approximate Bayesian computation (ABC);Holocene;phylogeography
DOI:
doi:10.5061/dryad.5sb1219
摘要:
d approximate Bayesian computation (ABC) for model comparison and parameter estimation for the demographic modelling using 27 EST associated microsatellites. We also performed
Data from: Computational performance and statistical accuracy of *BEAST and comparisons with other methods
负责人:
关键词:
Concatenation;Bayesian phylogenetics;Gene tree;Primates;Species tree;Pedicularis;Multispecies coalescent;Supermatrix;phylogenomics
DOI:
doi:10.5061/dryad.02tf9
摘要:
tree. In comparison, supermatrix concatenation methods assume that gene trees share a single common genealogical history, thereby equating gene coales

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