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Data from: Total-evidence dating under the fossilized birth-death process
负责人:
关键词:
Bayesian phylogenetic inference;relaxed clock;MCMC;birth-death process;total-evidence dating;tree prior
DOI:
doi:10.5061/dryad.26820
摘要:
of the Bayesian approach, total-evidence dating can also incorporate additional sources of information. Here, we take advantage of this and expand the analysis to inc
Data from: Bayesian morphological clock methods resurrect placoderm monophyly and reveal rapid early evolution in jawed vertebrates
负责人:
关键词:
placoderms;Monophyly;morphology;tip dating;tree topology;Bayesian;phylogenetics;Morphological clock;BEAST
DOI:
doi:10.5061/dryad.v30f1
摘要:
milar way to parsimony-informative traits, thus ensuring this data (unlike most existing morphological data sets) satisfied an important assumption of Bayesian tip-dat
Data from: Bayesian estimation of fossil phylogenies and the evolution of early to middle Paleozoic crinoids (Echinodermata)
负责人:
关键词:
DOI:
doi:10.5061/dryad.6hb7j
摘要:
phylogenetic relationships among Ordovician through Devonian crinoids using a Bayesian tip-dating approach. Results support several clades recognized in previous analyses
Data from: A simulation-based evaluation of tip-dating under the fossilized birth-death process
负责人:
关键词:
evolutionary simulation;molecular clock;Bayesian phylogenetics;fossilized birth-death process;total-evidence dating;tip-dating
DOI:
doi:10.5061/dryad.q2527ts
摘要:
Bayesian molecular dating is widely used to study evolutionary timescales. This procedure usually involves phylogenetic analysis
Data from: Treating fossils as terminal taxa in divergence time estimation reveals ancient vicariance patterns in the palpimanoid spiders
负责人:
关键词:
Total Evidence;molecular clock;Biogeography;Pangaea;divergence time estimation;fossils;vicariance;Gondwana
DOI:
doi:10.5061/dryad.7231d
摘要:
biogeographic ranges is then performed, using likelihood and Bayesian methods to take into account uncertainty in phylogeny and in dating. We find that treatin
Data from: Trilobite evolutionary rates constrain the duration of the Cambrian explosion
负责人:
Paterson, John R.
关键词:
Cambrian explosion evolutionary rates trilobites Bayesian tip-dating
DOI:
doi:10.5061/dryad.v7q827k
摘要:
e established. We test these hypotheses by applying Bayesian tip-dating methods to a comprehensive new dataset of Cambrian trilobites. We show that trilobites hav
Data from: Origin and diversification of living cycads: a cautionary tale on the impact of the branching process prior in Bayesian molecular dating
负责人:
关键词:
Cycadales;Permian until Present
DOI:
doi:10.5061/dryad.20k7m
摘要:
Background Bayesian relaxed-clock dating has significantly influenced our understanding of the timeline of plant evolution. This approach requires
Data from: Multiple global radiations in tadpole shrimps challenge the concept of ‘living fossils’
负责人:
关键词:
bayesian analysis;divergence time;Paleozoic;Mesozoic;'living fossil';Biogeography;Notostraca;Triops;diversification;Lepidurus;fossil;Cenozoic
DOI:
doi:10.5061/dryad.77bt2
摘要:
locus phylogeny of Branchiopoda and applying Bayesian divergence dating techniques using reliable fossil calibrations external to Notostraca. Our results suggest at least two bouts
Data from: Tip-dating and homoplasy: reconciling the shallow molecular divergences of modern gharials with their long fossil record
负责人:
关键词:
tip-dating;Thoracosauridae;Crocodylia;Gavialis;parsimony;phylogenetics;Bayesian inference;Archosauria;stratigraphy;Crocodylidae;Tomistoma
DOI:
doi:10.5061/dryad.3d23687
摘要:
ed Bayesian methods) are unable to tease apart these similarities and invariably unite thoracosaurs and Gavialis. However, tip-dated Bayesian approaches additional
Data from: TipDatingBeast: an R package to assist the implementation of phylogenetic tip-dating tests using BEAST
负责人:
关键词:
phylogenetic tip-dating;Phylogenetic Theory and Methods;phylogeography;molecular evolution;Bioinfomatics\/Phyloinfomatics;Measurably-evolving populations (MEPs);BEAST;date-randomization test;leave-one-out cross-validation
DOI:
doi:10.5061/dryad.43q71
摘要:
mate the timing of evolutionary events with rates of molecular evolution. In this context, BEAST, a program for Bayesian analysis of molecular sequences, is the mos

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