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Data from: Low-coverage, whole-genome sequencing of Artocarpus camansi (Moraceae) for phylogenetic marker development and gene discovery
负责人:
关键词:
MADS-box;Streblus;Artocarpus camansi;Moraceae;breadnut;Dorstenia;Maclura;Genome;Artocarpus;Ficus;Parartocarpus;Antiaropsis;breadfruit
DOI:
doi:10.5061/dryad.3293r
摘要:
Premise of the study: We used moderately low-coverage (17×) whole-genome sequencing of Artocarpus camansi (Moraceae) to develop genomic resources
Data from: Allele phasing has minimal impact on phylogenetic reconstruction from targeted nuclear gene sequences in a case study of Artocarpus
负责人:
关键词:
Artocarpus;incomplete lineage sorting;Target Enrichment;phylogenetics;allele phasing;HybSeq;alleles
DOI:
doi:10.5061/dryad.r8q72
摘要:
: We perform supermatrix phylogeny reconstruction and species tree estimation of Artocarpus based on three methods of accounting for heterozygous sequences
Data from: A transcriptome screen for positive selection in domesticated breadfruit and its wild relatives (Artocarpus spp.)
负责人:
Laricchia, Kristen M.
关键词:
breadfruit carotenoids domestication MADS-box positive selection transcriptome underutilized crops
DOI:
doi:10.5061/dryad.r7q2s
摘要:
PREMISE OF THE STUDY: Underutilized crops, such as breadfruit (Artocarpus altilis, Moraceae) have the potential to improve global food security
Data from: Phylogenetic diversity patterns in Himalayan forests reveal evidence for environmental filtering of distinct lineages
负责人:
关键词:
Terminalia bellirica;Machilus kurzii;Sarcochlamys pulcherrima;Eurya acuminata;Cyathea spinulosa;Melastoma malabathricum;Castanopsis indica;Walsura robusta;Erythrina stricta;trees;Tsuga dumosa;Elatostema platyphyllum;Toona sureni var. sureni;Altingia excelsa;Macaranga denticulata;filtering;Azadirachta indica;Community Ecology;Lyonia ovalifolia;Angiopteris evecta;Exbucklandia populnea;Grewia optiva;Zanthoxylum armatum;Daphne papyracea;Elaeagnus parvifolia;Bhesa robusta;Aglaia spectabilis;Dendrocalamus hamiltonii;Spondias pinnata;Dysoxylum binectariferum;Quercus leucotrichophora;Toona ciliata;Garuga pinnata;Pyrus communis;Albizia lucidior;Bambusa tulda;Breonia chinensis;Phoebe cooperiana;Gmelina arborea;Acacia sp.;Prunus cerasoides;Syzygium cumini;Terminalia myriocarpa;Dipterocarpus retusus;Gymnocladus assamicus;Tectona grandis;Juglans regia;Alstonia scholaris;Juniperus sp.;Callicarpa arborea;Michelia champaca;Baccaurea ramiflora;Ficus auriculata;Rhododendron barbatum;Casearia vareca;Duabanga grandiflora;Senna siamea;Hovenia dulcis var. dulcis;Gleditsia assamica;Aralia sp;Morus laevigata;Ostodes paniculata;Ricinus communis;Artocarpus heterophyllus;Pinus roxburghii;Berberis leschenaultii;Syzygium jambos;Lagerstroemia speciosa;Phlogacanthus thyrsiflorus;Garcinia cowa;Illicium griffithii;Meyna laxiflora;Tetrameles nudiflora;Bombax ceiba;Rhododendron maddenii;Bambusa balcooa;Acer campbellii;Ficus glaberrima;Smilax sp.;Rhododendron wallichii;Bauhinia ungulata;beta diversity;Litsea cubeba;Citrus maxima;phylogenetics;Kydia calycina;Coriaria nepalensis;Caryota urens;Schima khasiana;Chukrasia tabularis;Cyathea sp;Leea macrophylla;Schima wallichii;Ficus hispida;Psidium guajava;Oroxylum indicum;Ficus benjamina var. nuda;Wendlandia glabrata;Brassaiopsis mitis;Shorea robusta;Trewia nudiflora;Micromelum integerrimum;Hevea brasiliensis;Calamus sp;Ficus cyrtophylla;Pterospermum acerifolium;Stereospermum chelonoides;Vernonia arborea;Mesua ferrea;Moringa oleifera;Dillenia indica;Eucalyptus sp.;Glochidion heymeanum;Lindera sp.;Styrax sp.;Albizia procera;Maesa indica;Quercus glauca;Carallia brachiata;Magnolia pealiana;Schefflera venulosa;Acer cappadocicum;Eurya japonica;Brucea javanica;Rhododendron thomsonii;Alnus nepalensis;Boehmeria nivea;Rhododendron lanatum;Abroma augusta;Ailanthus integrifolia;Callicarpa macrophylla;Litsea monopetala;Garcinia pedunculata;Bridelia retusa;Zizyphus mauritiana;Gaultheria sp.;Rhododendron fulgens;Hydrangea sp.;Debregeasia saeneb;Viburnum cylindricum;Mallotus philippensis;Toxicodendron griffithii;Phyllanthus emblica;Saurauia nepaulensis;Boehmeria glomerulifera;Pieris formosa;Pinus kesiya;Sterculia villosa;Casuarina sp;Cordia grandis;Boehmeria macrophylla;Cupressus torulosa;Magnolia hodgsonii;Rhododendron arboreum;Ficus hirta;Merrilliopanax alpinus;Pinus wallichiana;Docynia indica;Rhododendron cinnabarinum;species richness;Bischofia javanica;Camellia sinensis;Trevesia palmata;Artocarpus chama;Myrica esculenta;Pandanus furcatus;Melia azedarach;Ficus racemosa;Acer caesium;Cassia fistula;Livistona jenkinsiana;Boehmeria rugulosa;Actinodaphne obovata;Quercus baloot;Pterospermum lanceifolium;Boehmeria platyphylla;Canarium strictum;Beilschmiedia fagifolia;Abies alba;Mangifera indica;Cornus capitata;Dalbergia sissoo;Shorea assamica;Rhododendron falconeri;Loranthus sp;Trema orientalis;Viburnum colebrookeanum;Alangium chinense;Elaeocarpus floribundus;Sambucus adnata;Ardisia macrocarpa;Heteropanax fragrans;Citrus reticulata;Engelhardia spicata;Clerodendrum infortunatum;Ficus semicordata;Persea odoratissima;Rhododendron grande;Albizia lebbeck;Podocarpus neriifolius;elevational gradient;Cinnamomum bejolghota;Rhus chinensis;Aquilaria malaccensis;Litsea salicifolia;Pinus merkusii;Terminalia chebula;Musa sp.
DOI:
doi:10.5061/dryad.1tr7p0k
摘要:
interactions. Elevational gradients are particularly useful because they often encompass a large climatic range within a small geographical extent. Here, we analyzed tree communities
Data from: Globally, functional traits are weak predictors of juvenile tree growth, and we do not know why
负责人:
关键词:
Anacardium excelsum;Shorea beccariana;Pouteria grandiflora;Current-day;Inga punctata;Quercus rubra;Pentaspadon motleyi;Pachira flaviflora;Bernoullia flammea;Mansonia altissima;Swartzia simplex;Vitex pinnata;functional ecology;Shorea xanthophylla;Albizia saman;Inga auristellae;Licania macrophylla;Hierarchical models;Terminalia amazonia;Inga lopadadenia;Albizia adinocephala;Eschweilera sagotiana;Inga pezizifera;Protium unifoliolatum;Schizolobium amazonicum;Goupia glabra;Calophyllum longifolium;Quercus ilex;Acer campestre;Simarouba amara;Shorea laxa;Betula papyrifera;Luehea seemannii;Inga sinacae;FunDivEUROPE;Hieronyma alchorneoides;Sextonia rubra;Tocoyena pittieri;plant population and community dynamics;Beilschmiedia pendula;Nephelium lappaceum;Ocotea cymosa;Cedrela odorata;Qualea rosea;Xylosma spiculifera;Anisoptera grossivenia;Castanospora alphandii;Castanea henryi;Shorea leprosula;Dipterocarpus palembanicus;Shorea ovalis;Dipteryx oleifera;Schizolobium parahyba;Diospyros kaki;Cojoba arborea;Picea glauca;Larix decidua;Fraxinus excelsior;Sorbus aucuparia;Guarea guidonia;Lansium domesticum;Dicorynia guianensis;Jacaranda copaia;Enterolobium cyclocarpum;Randia armata;Pinus strobus;Lithocarpus glaber;Prunus avium;Swartzia grandifolia;Vatairea lundellii;Eschweilera grandiflora;Licania heteromorpha;Quercus myrsinifolia;Eriotheca globosa;Heliocarpus appendiculatus;Stephanostegia capuronii;Sclerolobium densiflorum;Virola surinamensis;Populus tremula;Larix sibirica;Castanopsis sclerophylla;Coussarea curvigemma;Protium sagotianum;Handroanthus guayacan;Colubrina glandulosa;Maquira guianensis;Cordia megalantha;Swartzia panacoco;Toxicodendron succedaneum;Alphitonia petriei;Phyllanthus salviifolius;Acer platanoides;Sorbus torminalis;Albizia zygia;Amburana cearensis;Lafoensia punicifolia;Artocarpus heterophyllus;Eugenia nesiotica;Swartzia polyphylla;Faramea occidentalis;Tilia cordata;Calycophyllum candidissimum;Eschweilera chartaceifolia_aff;Rinorea sylvatica;Spondias mombin;Eschweilera coriacea;Pachira aquatica;rgr;Picea abies;Terminalia oblonga;Protium opacum;Ochroma pyramidale;Phoebe microphylla;Parashorea malaanonan;Prunus buxifolia;Quercus robur;Lonchocarpus sericeus;Ficus pleurocarpa;Dipterocarpus acutangulus;Lophira alata;Poulsenia armata;Shorea faguetiana;Artocarpus integer;Cordia alliodora;Erythrina poeppigiana;Eperua grandiflora;Thuja occidentalis;Protium gallicum;Shorea gibbosa;Vatica nitens;Cardwellia sublimis;Protium meridionale;Gliricidia sepium;Albizia tomentosa;Posoqueria latifolia;Swartzia benthamiana;Terminalia ivorensis;Artocarpus incisus;Aspidosperma spruceanum;Diospyros cathayensis;Quercus pyrenaica;Swietenia macrophylla;Inga edulis;Virola koschnyi;Milicia excelsa;Fagus sylvatica;Khaya ivorensis;Baillonella toxisperma;Ceiba pentandra;Pinus resinosa;Pericopsis elata;Pachira brevipes;Parashorea tomentella;Aegiphila bogotensis;Guapira myrtiflora;Tarrietia utilis;Hopea dryobalanoides;Dalbergia retusa;Inga stipularis;Eperua falcata;Recordoxylon speciosum;Acer saccharum;Diphysa americana;Trichilia tuberculata;Sterculia apetala;Calophyllum brasiliense;Shorea macroptera;Quercus glauca;Paraserianthes falcataria;Picea rubens;Pinus massoniana;Quercus petraea;Platymiscium parviflorum;Aspidosperma megalocarpon;Garcinia intermedia;Dipterocarpus conformis;Harungana madagascariensis;Lacistema aggregatum;Larix laricina;Inga cayennensis;Aralia chinensis;Astronium lecointei;Castilla elastica;Tetragastris panamensis;Lindera limprichtii;Pachira sessilis;Shorea parvifolia;Carpinus betulus;Protium carnosum;Platypodium elegans;Durio zibethinus;Pinus pinaster;Sapindus mukorossi;Gustavia superba;Dysoxylum mollissimum;Pachira insignis;Albizia guachapele;Eriotheca longitubulosa;Garcinia macrophylla;Pouteria reticulata;Genipa americana;Protium aracouchini;Uapaca ferruginea;size-standardized growth rate;Shorea macrophylla;Lindera communis;Erythrina fusca;Brosimum alicastrum;Dipterocarpus globosus;Hura crepitans;Protium heptaphyllum;Cunninghamia lanceolata;Stemmadenia donnell-smithii;Acer pseudoplatanus;Stryphnodendron microstachyum;Heisteria concinna;Homalanthus novoguineensis;Micropholis egensis;Tabebuia rosea;Cecropia ficifolia;Vochysia ferruginea;Ficus yoponensis;Dryobalanops sumatrensis;Tapirira guianensis;Camellia oleifera;Sloanea obtusifolia;Protium decandrum;Tachigali versicolor;Shorea argentifolia;Pseudotsuga menziesii;Virola michelii;Bursera simaruba;Pentadesma butyracea;Hopea beccariana;Betula pendula;Baccaurea motleyana;Inga cf_coruscans;Intsia palembanica;Copaifera lucens;Mangifera indica;Alnus glutinosa;Cecropia obtusifolia;Astronium graveolens;Parkia speciosa;Pachira quinata;Tabernaemontana arborea;Vochysia guatemalensis;Micropholis guyanensis;Ulmus glabra;Licania platypus;Alangium chinense;Ormosia macrocalyx;Dryobalanops lanceolata;Guazuma ulmifolia;Pouteria sapota;Inga thibaudiana;Archidendron jiringa;Hymenaea courbaril;Pinus sylvestris;Hopea sangal;Acer rubrum;Hopea ferruginea;Chrysophyllum cainito;Amphitecna tuxtlensis;Cryptomeria japonica;Swartzia cf_laevicarpa;Dalbergia hupeana;Shorea johorensis;Virola sebifera;Balizia elegans;Dussia mexicana;Peronema canescens;Podocarpus neriifolius;Protium subserratum;Cedrela montana;Abies balsamea;Theobroma speciosum;Eugenia oerstediana;Cecropia sciadophylla;TreeDivNet;Micropholis venulosa;Betula alleghaniensis;Symphonia globulifera;Phoebe zhennan;Rollinia mucosa;Growth;Platymiscium pinnatum
DOI:
doi:10.5061/dryad.h9083
摘要:
1. Plant functional traits, in particular specific leaf area (SLA), wood density and seed mass, are often good predictors of individual tree

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