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Data from: Microbial consortia controlling biogenic gas formation in the Qaidam Basin of western China
负责人:
关键词:
Gas well;Microbial consortia;Salinity
DOI:
doi:10.5061/dryad.4h6v0
摘要:
% to 14% of total archaeal reads with increasing Cl concentration; in contrast, methylotrophic species increased from 11% to 85%. Given that the proportion
Data from: Taxon abundance, diversity, co-occurrence and network analysis of the ruminal microbiota in response to dietary changes in dairy cows
负责人:
Tapio, Ilma
关键词:
Diet Bacteria Protozoans Fungi Archaean biology Archaeal taxonomy Oils
DOI:
doi:10.5061/dryad.t6t0q
摘要:
. QPCR analysis showed that the total amounts of bacteria, archaea or ciliate protozoa were not significantly altered either by FC ratio or addition
Data from: Deconstruction of archaeal genome depict strategic consensus in core pathways coding sequence assembly
负责人:
关键词:
metabolic pathway;codon context;Archaea;codon usage
DOI:
doi:10.5061/dryad.sv70f
摘要:
A comprehensive in silico analysis of 71 species representing the different taxonomic classes and physiological genre of the domain Archaea
Data from: Telling the whole story in a 10,000-genome world
负责人:
关键词:
Archaea;bacteria;Spirochaetes;Clostridia;Acidithiobacillus
DOI:
doi:10.5061/dryad.gf39c8dc
摘要:
e not alone sufficient to solve the analysis problem. A phylogenomic analysis of 1173 sequenced bacterial and archaeal genomes generated phylogenetic trees
Data from: The effects of model choice and mitigating bias on the ribosomal tree of life
负责人:
关键词:
Trichoplax adhaerens;Cyanophora paradoxa;Desulfurispirillum indicum;Chlamydomonas reinhardtii;Bigelowiella natans;Cenarchaeum symbiosum;Cryptosporidium muris;Zymomonas mobilis;Nitrosoarchaeum limnia;Lactobacillus fermentum;Aspergillus flavus;Oscillibacter valericigenes;Arachnula sp;Archaeoglobus fulgidus;single-matrix model;Thermoplasma acidophilum;Paenibacillus sp;Perkinsus marinus;Corynebacterium pseudotuberculosis;Natromonas pharaonis;Staphylothermus marinus;two-domain tree;Diplonema sp;Prevotella denticola;Cyanothece sp;Ribosomal tree of life;Candida albicans;Anaerolinea thermophila;Methanocaldococcus jannaschii;Phaeodactylum tricornutum;Methylacidiphilum infernorum;Methanosarcina mazei;Dictyostelium discoideum;Chlorobium limicola;Thermotoga maritima;Methanosphaera stadtmanae;Babesia bovis;Thermodesulfatator indicus;Thermovibrio ammonificans;Flamella sp;Korarchaeum cryptofilum;Syntrophus aciditrophicus;Methanobrevibacter smithii;Deinococcus deserti;Gemmatimonas aurantiaca;Dyadobacter fermentans;Methanococcus aeolicus;Tribonema sp;Toxoplasma gondii;Acetobacter pasteurianus;Methanococcoides burtonii;Leishmania major;Thalassiosira pseudonana;Aeropyrum pernix;Nitrosomonas europaea;mixture model;Thermococcus kodakarensis;Arabidopsis thaliana;Apis mellifera;Nitrosopumilis sp;Halobacterium salinarum;Acidilobus saccharovorans;Pyrobaculum aerophilium;Fibrobacter succinogenes;Acanthamoeba sp;Idiomarina loihiensis;Ciona intestinalis;Meiothermus silvanus;Thermocrinis albus;Neisseria meningitidis;Spirochaeta coccoides;Methanopyrus kandleri;Xylella fastidiosa;Bodo sp;Ignicoccus hospitalis;Physarum polycephalum;Desulfurococcus mucosus;Danio rerio;Compositional heterogeneity;Treponema brennaborense;Sulfolobus solfataricus;Hypterthermus butylicus;Picrophilus torridus;Plasmodium vivax;Denitrovibrio acetiphilus;Haloarcula marismortui;three-domain tree;Metallosphaera sedula;Phytophthora infestans;Planctomyces brasiliensis;Thermovirga lienii;Trypanosoma brucei;Dictyoglomus thermophilum;Cryptobacterium curtum;Trimastix pyriformis;Cryptococcus gattii;Dehalococcoides ethenogenes;Pyrolobus fumarii;Guillardia theta;Methanoculleus marisingri;Thermus scotoductus;Syntrophothermus lipocalidus;Coraliomargarita akajimensis;Desulfobacca acetoxidans;Nitrosospira multiformis;Heterosigma sp;Prochlorococcus marinus;Fusobacterium nucleatum;Rhodopirellula baltica;Emiliana huxleyi;Nanoarchaeum equitans;Pyrococcus horikoshii;Ostreococcus tauri;Euglena sp
DOI:
doi:10.5061/dryad.7785h
摘要:
to a Korarchaeota/Thaumarchaeota (KT) or Crenarchaeota/KT clade for all models under all or at least one of the strategies employed. Taxonomic manipulation allows
Data from: Analysis of spounaviruses as a case study for the overdue reclassification of tailed phages
负责人:
关键词:
Caudovirales;spounaviruses;Herelleviridae;phylogenetics;virus taxonomy;bacteriophage taxonomy
DOI:
doi:10.5061/dryad.106q6g6
摘要:
and Archaeal Viruses Subcommittee of the International Committee on Taxonomy of Viruses (ICTV) to consider overall reorganization of phage taxonomy
Data from: Phylogenetic affiliation of SSU rRNA genes generated by massively parallel sequencing: new insights into the freshwater protist diversity
负责人:
关键词:
Protozoa;protist
DOI:
doi:10.5061/dryad.66hc3
摘要:
d to characterize bacterial and archaeal communities, and rarely to characterize protist communities. In addition, although taxonomic assessment through phylogeny
Data from: Contrasting taxonomic stratification of microbial communities in two hypersaline meromictic lakes
负责人:
关键词:
Archaea;hypersaline meromictic lakes;bacteria;biogeochemical cycling;methanogenesis;prokaryotic diversity;ultrasmall uncultivated Archaea;deep coverage SSU rDNA amplicon sequencing
DOI:
doi:10.5061/dryad.2gm06
摘要:
. In addition, ultrasmall uncultivated archaeal lineages were detected in the chemocline of Fara Fund Lake, where the recently proposed Nanohaloarchaeota phylum
Data from: Using CRISPRs as a metagenomic tool to identify microbial hosts of a diffuse flow hydrothermal vent viral assemblage
负责人:
关键词:
DOI:
doi:10.5061/dryad.8826
摘要:
regimes in both the bacterial and archaeal domains.
Data from: The core microbiome bonds the Alpine bog vegetation to a transkingdom metacommunity
负责人:
关键词:
Environmental DNA;metagenomics;Microbial Biology;Species Interactions;Archaea;bacteria;Community Ecology
DOI:
doi:10.5061/dryad.8n2d5
摘要:
phyla, while Proteobacteria (30.8%), Verrucomicrobia (20.3%) and Planctomycetes (15.1%) belonged to the most abundant groups. Interestingly, the archaeal

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