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Data from: Detection and polarization of introgression in a five-taxon phylogeny
- 负责人：
- DOI：
- doi:10.5061/dryad.4h462
- 摘要：
- the detection of introgression. A variety of methods, including the D-statistic (a.k.a. the “ABBA–BABA test”), have been proposed to infer introgression
Data from: Reticulate evolution within a spruce (Picea) species complex revealed by population genomic analysis
- 负责人：
- DOI：
- doi:10.5061/dryad.gb6c3b0
- 摘要：
- occurred among some taxa after secondary contact according to an analysis based on modified ABBA-BABA statistics that accommodated a rapid diversification
Data from: Hidden histories of gene flow in highland birds revealed with genomic markers
- 负责人：
- DOI：
- doi:10.5061/dryad.s8v80
- 摘要：
- (UCEs) in concert with phylogenies, clustering algorithms and newer introgression tests specifically designed to detect ancient gene flow (e.g. ABBA/BABA
Data from: HyDe: a Python package for genome-scale hybridization detection
- 负责人：
- DOI：
- doi:10.5061/dryad.372sq
- 摘要：
- of gene flow. The theory underlying the detection of hybridization using these site pattern probabilities exploits the relationship between the coalescent
Data from: Inferring introgression using RADseq and DFOIL: power and pitfalls revealed in a case study of spiny lizards (Sceloporus)
- 负责人：
- DOI：
- doi:10.5061/dryad.s5t3vm8
- 摘要：
- (Sceloporus) from northeastern México. First, we find evidence for recurrent mtDNA introgression between the two focal species based on patterns of mito?nuclear
Data from: Conflicting phylogenomic signals reveal a pattern of reticulate evolution in a recent high-Andean diversification (Asteraceae: Astereae: Diplostephium)
- 负责人：
- DOI：
- doi:10.5061/dryad.cn74h
- 摘要：
- simulations and the detection of introgression using the D-statistic (ABBA-BABA test). We found significant incongruence among the nuclear, chloroplast
Data from: Phylogenetics support an ancient common origin of two scientific icons: Devils Hole and Devils Hole pupfish
- 负责人：
- DOI：
- doi:10.5061/dryad.2bm21
- 摘要：
- The Devils Hole pupfish (Cyprinodon diabolis; DHP) is an icon of conservation biology. Isolated in a 50 m2 pool (Devils Hole), DHP is one of the rarest vertebrate species known and an evolutionary anomaly, having survived in complete isolation for thousands of years. However, recent findings suggest DHP might be younger than commonly thought, potentially introduced to Devils Hole by humans in the past thousand years. As a result, the significance of DHP from an evolutionary and conservation perspective has been questioned. Here we present a high-resolution genomic analysis of DHP and two closely related species, with the goal of thoroughly examining the temporal divergence of DHP. To this end, we inferred the evolutionary history of DHP from multiple random genomic subsets and evaluated four historical scenarios using the multispecies coalescent. Our results provide substantial information regarding the evolutionary history of DHP. Genomic patterns of secondary contact present strong evidence that DHP were isolated in Devils Hole prior to 20–10 ka and the model best supported by geological history and known mutation rates predicts DHP diverged around 60 ka, approximately the same time Devils Hole opened to the surface. We make the novel prediction that DHP colonized and have survived in Devils Hole since the cavern opened, and the two events (colonization and collapse of the cavern's roof) were caused by a common geologic event. Our results emphasize the power of evolutionary theory as a predictive framework and reaffirm DHP as an important evolutionary novelty, worthy of continued conservation and exploration.
Data from: Diversification and asymmetrical gene flow across time and space: lineage sorting and hybridization in polytypic barking frogs
- 负责人：
- DOI：
- doi:10.5061/dryad.n420r
- 摘要：
- polytypic barking frogs (Craugastor augusti complex) to infer phylogenetic relationships and test for the signature of introgressive hybridization amo
Data from: Species delimitation with gene flow: a methodological comparison and population genomics approach to elucidate cryptic species boundaries in Malaysian Torrent Frogs
- 负责人：
- DOI：
- doi:10.5061/dryad.p928v
- 摘要：
- *). We then tested the validity of putative boundaries by estimating spatiotemporal gene flow (fastsimcoal2, ABBA-BABA) to assess the extent of genetic isolation amo
Data from: Introgression and phenotypic assimilation in Zimmerius flycatchers (Tyrannidae): population genetic and phylogenetic inferences from genome-wide SNPs
- 负责人：
- DOI：
- doi:10.5061/dryad.633bk
- 摘要：
- l sampled lineages in configurations appropriate for a recently proposed statistical (‘ABBA/BABA’) test that distinguishes gene flow from
