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Data from: TipDatingBeast: an R package to assist the implementation of phylogenetic tip-dating tests using BEAST
- 负责人：
- DOI：
- doi:10.5061/dryad.43q71
- 摘要：
- the timing of evolutionary events with rates of molecular evolution. In this context, BEAST, a program for Bayesian analysis of molecular sequences, is the mos
Data from: Empirical and Bayesian approaches to fossil-only divergence times: a study across three reptile clades
- 负责人：
- DOI：
- doi:10.5061/dryad.6140j
- 摘要：
- of tree topology and divergence times using BEAST tip-dating on datasets consisting only of fossils by using relaxed morphological clocks and birth-death tree priors
Data from: Computational performance and statistical accuracy of *BEAST and comparisons with other methods
- 负责人：
- DOI：
- doi:10.5061/dryad.02tf9
- 摘要：
- t concatenation is not a consistent estimator of the species tree. *BEAST, a fully Bayesian implementation of the multispecies coalescent, is popular
Data from: The effects of inference method, population sampling and gene sampling on species tree inferences: an empirical study in slender salamanders (Plethodontidae: Batrachoseps)
- 负责人：
- DOI：
- doi:10.5061/dryad.2sc4n
- 摘要：
- d large effects in *BEAST and STEM, but not in MP-EST. Different loci carried the greatest leverage in these different methods, showing that the cause
Data from: Markov-modulated continuous-time Markov chains to identify site- and branch-specific evolutionary variation in BEAST
- 负责人：
- DOI：
- doi:10.5061/dryad.230s5h0
- 摘要：
- rall substitution rate) at individual sites to vary across lineages. We implement a general MMM framework in BEAST, a popular Bayesian phylogenetic inference
Data from: Mechanisms of global diversification in the brown booby (Sula leucogaster) revealed by uniting statistical phylogeographic and multilocus
- 负责人：
- DOI：
- doi:10.5061/dryad.t49d5
- 摘要：
- phylogenetic inference (e.g., *BEAST) may be particularly useful when applied to populations with relatively old divergence times. Here we use such an approach
Data from: Bayesian total-evidence dating reveals the recent crown radiation of penguins
- 负责人：
- DOI：
- doi:10.5061/dryad.44pf8
- 摘要：
- s demonstrate that including stem-fossil diversity can greatly improve the estimates of the divergence times of crown taxa. The method is available in BEAST
Data from: Phylodynamic model adequacy using posterior predictive simulations
- 负责人：
- DOI：
- doi:10.5061/dryad.65p331m
- 摘要：
- BEAST2 software, that allows assessing the adequacy of phylodynamic models. We illustrate its utility by analysing phylogenetic trees from two viral
Data from: Ancient mitochondrial DNA provides high-resolution time scale of the peopling of the Americas
- 负责人：
- DOI：
- doi:10.5061/dryad.23cg1
- 摘要：
- ates the presence of humans as far as southern Chile by 14.6 thousand years ago (ka), shortly after the Pleistocene ice sheets blocking access from eastern Beringia
Data from: Historical biogeography and temporal diversification in Symphoricarpos (Caprifolieae, Caprifoliaceae, Dipsacales)
- 负责人：
- DOI：
- doi:10.5061/dryad.7bp65gp
- 摘要：
- within Symphoricarpos and related Caprifolieae species using BEAST. Based on these phylogenetic and divergence time estimations we reconstructed ancestral areas usi
