A cryogenic tissue sample embedding storage system belongs to the field of cryopreservation of biological tissue samples, which in particular, relates to a cryogenic tissue sample embedding storage system. The present invention provides a cryogenic tissue sample embedding storage system that can avoid the confusion of samples, prevent damage to identifier information in the cutting process, and has high embedding efficiency. The present invention comprises an embedded label, a label cover, and an embedding base, and in terms of its structure, the embedding base is provided with a groove structure for placing and limiting the position of the embedded label, and an embedding enclosure wall flexibly connected to the embedding base is disposed above the groove structure.