The invention relates to an integrated surgical navigational and neuromonitoring system. The integrated system provides real-time visualization of an instrument relative to a visualization of patient anatomy. The integrated system also acquires and incorporates neuromonitoring information into the visualization of the patient anatomy. The integrated system is further capable of integrating neurodiagnostic information, such as nerve conduction information, with anatomical and instrument position information to evaluate changes in neural integrity and develop treatment strategies.