The present invention relates to medical biotechnology and cell technology. Proposed is a method for isolating a stromal vascular fraction of adipose tissue, which includes: decantation of a lipoaspirate; delicate washing out of the lipoaspirate in buffer solutions; enzymatic treatment by using a mixture of collagenases, thermolysin, dispase and trypsin at a temperature of 37ºC; centrifugation at 500-2000 g and filtration through microfilters with a pore size of 10-300 microns with the subsequent removal of fat and stromal tissue matter; repeated washing out and concentration of the cell fraction, wherein all the stages of the process are carried out under closed system conditions. A corresponding device is configured as a sealed container consisting of two chambers, which are separated from one another by nylon microfilters with pore sizes of 10-500 microns. The device comprises fittings provided with valves, as well as channels for the introduction and removal of biological tissue and a cellular end product for subsequent administration. Thanks to the presence of a cocktail of mature and progenitor cells in the stromal vascular fraction, which have a paracrine effect, the sterility of all the stages of the process and the safety thereof, the claimed method can be used in medicine for cell-based therapy and regeneration of organs and tissues, including: soft tissue and bone regeneration, treatment of cosmetic defects, chronic trophic and radiation ulcers, burns, Crohn's disease, multiple sclerosis, graft-versus-host reactions, myocardial infarction and strokes of different origins.