There are provided a cultivation control system, a cultivation control program, and a cultivation control method that can independently set growth conditions in a plurality of divided cultivation spaces and that can perform control by changing growth environments in the individual cultivation spaces. In a cultivation apparatus 300, each of the internal environments of a plurality of shielded spaces is shielded from the internal environments of the shielded spaces adjacent thereto and from an external environment of the cultivation apparatus 300. A portable communication communication terminal 200 performs remote control of environment control apparatuses 350a to 350f such that at least one of the internal environments of the plurality of shielded spaces is independently controlled.