Methods, devices, and systems are disclosed for treating patients with ultrasound targeted at regions of the brain. An ultrasound transducer is positioned on a patient's head to target a region of the patient's brain for ultrasound therapy. An ultrasound wave is emitted at the target region of the patient's brain. At least partially concurrently, a fMRI imaging device generates real time images of activity in the patient's brain, for example by ASL protocol, BOLD protocol, or a combination thereof. Activity in the patient's brain caused by the ultrasound wave is detected, typically a distance Δ； from the target region. The transducer is repositioned or reoriented to correct for Δ； and better target the region, and another series of ultrasound waves are directed at the target region with improved accuracy.
