The invention relates to a method and a system for manufacturing a container (1) for an organ. An image data set of the organ is collected using a medical image acquisition apparatus, in particular a CT apparatus (CT: computer tomography), a MRI apparatus (MRI: magnetic resonance imaging), and/or an ultrasonography apparatus. A surface shape of the organ or parts thereof is determined by analyzing the collected image data set. The container (1) is manufactured in accordance to the determined surface shape of the organ, such that the organ as a whole or only partially may be stabilized and shaped within the container (1) during a medical intervention.