This disclosure relates to a method and system that models a seed structure and uses a spectral analysis to identify which morphological seed structures are existent in the seed/seedling. Additionally, this disclosure relates to a method and system that applies multi-spectral analysis using predetermined models of a seed/seedling to identify which morphological structures are existent in the seed/seedling. The information about the existence or non-existence of structures of the seed/seedling is used to classify the seed as having a specific characteristic, for later commercial use or sale. The seed market determines which specific characteristic the method will use to classify the seed/seedling. The individual seed classification may help determine associated seed lot germination values.
