A method of acquiring a tomography image includes acquiring a plurality of raw data by detecting an X-ray irradiated to an object from an X-ray generator a plurality of times, wherein an X-ray detector performs the detecting; setting at least a part of the object as a region of interest; and reconstructing the tomography image including the region of interest, based on the plurality of raw data, wherein the reconstructing of the tomography image includes: selecting filter kernels based on distances between positions of the X-ray generator that irradiated the X-ray to the region of interest and positions of voxels included in the region of interest; generating filter images by applying the selected filter kernels to the raw data corresponding to the positions of the X-ray generator that irradiated the X-ray; and reconstructing the tomography image from the filter images by back-projecting the filter images.