In a method and system for acquiring magnetic resonance image data from a subject, using a data acquisition unit in which a basic magnetic field is generated, a division is designated in a planar section through the subject that divides the planar section into a first section and a second section, with the homogeneity of the basic magnetic field being better in said first section than in said second section. An echo planar imaging sequence is implemented to acquire the magnetic resonance imaging data, with magnetic resonance data being acquired from the first section only from gradient echo signals in the echo planar imaging sequence, and magnetic resonance data from said the second section being acquired from both gradient echo signals and spin echo signals in the echo planar imaging sequence. The method and apparatus are particularly suited for acquiring functional magnetic resonance imaging (fMRI) data from the brain of a subject, in which the first section is an upper portion of the brain and the second section is a lower portion of the brain.
