According to one embodiment, a magnetic resonance imaging apparatus includes a structural information acquisition unit, an abnormal part detection unit, an imaging region setting unit and an imaging unit. The structural information acquisition unit is configured to acquire anatomical structural information based on first image data of an object. The abnormal part detection unit is configured to detect an abnormal region based on the structural information. The imaging region setting unit is configured to indicate an imaging region according to a detection result of the abnormal region. The imaging unit is configured to acquire second image data of the object by imaging of an imaging region set based on the imaging region according to the detection result of the abnormal region.
