According to one embodiment, a medical image processing apparatus, includes: a first acquisition unit a second acquisition unit and a part-removed image generation unit, wherein the first acquisition unit is adapted to acquire a first radiograph that is a virtual radiograph generated to have a specified part or a predetermined part, among parts included in volume data indicative of a three-dimensional structure of an inside of a body of a patient, being emphasized, the second acquisition unit is adapted to acquire a second radiograph of the inside of the body of the patient, and the part-removed image generation unit is adapted to generate a part-removed image by removing the specified or predetermined part or parts other than the specified or predetermined part from the second radiograph with reference to the first radiograph.
