A medical control system comprises: first and second controllers a touch panel operation unit which receives an operation to the controllers a switching unit which selectively switches a connection state between first and second states. The operation unit has a touch signal transmission unit which transmits a signal to the first controller when and the operation unit is touched in the first state. The first controller has a first operation command transmission unit which transmits to a peripheral equipment an command in which an operation content of the peripheral equipment is specified by the signal, a first connection state detection unit which detects a change of connection state from the first state to the second state by the switching unit during a period the operation unit is being touched, a first control unit which stops a transmission of the command in accordance with a detection result of the detection unit.
