PROBLEM TO BE SOLVED: To provide an apparatus that acquires correct internal functional information even if plural measurement positions are displaced from each other, in the apparatus to compare and calculate a plurality of measurement results to acquire internal functional information.SOLUTION: The functional information acquisition apparatus includes: an absorption coefficient acquisition part to acquire first data showing a profile of a first absorption coefficient corresponding to light of a first wavelength from signals corresponding to the light of the first wavelength, and second data showing a profile of a second absorption coefficient corresponding to light of a second wavelength different from the first wavelength from signals corresponding to the light of the second wavelength and having an image spatial resolution lower than that of the first data; and a functional information acquisition part to acquire functional information using the first data and the second data.SELECTED DRAWING: Figure 2