An indirect bonding tray includes a least one tooth portion. Each tooth portion includes an occlusal surface that conforms to an occlusal surface of an associated tooth of a patients dentition. At least one arm includes an arm tip configured to engage an orthodontic bracket. The at least one arm is movably attached to at least one tooth portion to move between a first position and second position relative to a bonding surface of the associated tooth. In the second position, the arm is in a position configured to hold an orthodontic bracket in a predetermined treatment position relative to the bonding surface of the associated tooth.