A method of taking a scan of a patient's oral cavity may include providing an anatomical healing cap that can be received within a subgingival void of a given tooth position. The method may also include taking a first scan (e.g., an extraoral scan) of the anatomical healing cap before seating the anatomical healing cap into the subgingival void of the given tooth position, where the anatomical healing cap is coupled to an implant disposed adjacent the anatomical healing cap. Further, the method can involve taking a second scan (e.g., an intraoral scan) of the anatomical healing cap and surrounding surfaces, and then integrating the two scans into an overall oral cavity scan. Reference points from the first scan may be used to align the second scan with the first scan, integrating the two together.
