An indirect bonding tray places orthodontic appliances in precise, predetermined positions on the teeth of a patient. The indirect bonding tray includes a first matrix material that extends over a set of appliances and a second matrix material that extends over the first matrix material. The indirect bonding tray also includes at least one occlusal stop member that is connected to the second matrix material for firm, relatively hard contact with the occlusal tips of the patients teeth when the tray is received in place over the patients dental arch.
