A depth cooling implant system having a probe device implanted inside a targeted area of the brain, such as the medial temporal lobe, for the treatment of epilepsy is disclosed. The probe device includes a heat pipe having a sensor for detecting the temperature of surrounding brain tissue as well as a plurality of recording electrodes for monitoring EEG activity of the brain. Further, the heat pipe defines a proximal portion in operative engagement with a cooling chip that provides a nearly instantaneous cooling effect to the heating pipe in order to immediately cool the targeted area of the brain when an epileptic seizure is detected. The probe device is operatively associated with a probe controller having a computer and battery arrangement that may be implanted in the patient in order to monitor brain activity and selectively activate the cooling chip for cooling the medial temporal lobe in response to an epileptic seizure.