A corneal endothelial cell analysis method includes: a step of displaying a photographed image including endothelial cells of a cornea of an examinees eye on a monitor a step of setting, based on an operation signal from a user interface, regions of the endothelial cells for each or more than one of the cells with respect to the photographed image displayed on the monitor, the setting step including setting the endothelial cell regions on the one photographed image by use of setting modes including at least a first setting mode of setting the endothelial cell regions and a second setting mode different from the first setting mode and a step of obtaining an analysis result on the endothelial cells of the examinees eye based on the endothelial cell regions set by the first setting mode and the endothelial cell regions set by the second setting mode.
