A particulate material sensing and agitation control system of an agricultural system includes a drive system configured to operate an agitating system, a plurality of sensors, in which each sensor of the plurality of sensors may detect presence of particulate material at the sensor, and a controller. The controller is configured to determine a functional status of each sensor of the plurality of sensors, and, in response to determining the functional status of a respective sensor of the plurality of sensor is functioning, determine a detection status of the respective sensor. The controller is further configured to output a control signal to instruct the drive system to operate the agitating system in a selected operating mode of a plurality of operating modes based on a position within the agricultural system, the functional status, and the detection status of each sensor of the plurality of sensors.
