Methods for manufacturing anatomical healing caps, including forming an anatomical healing cuff body for a given tooth position, the anatomical healing cuff body having a cross-section and an exterior surface so that the anatomical healing cuff body provides substantially custom filling of at least an emergence portion of a void where a natural tooth once emerged from the void or where a tooth would have emerged from a void of the given tooth position, and forming both lateral buccal and lingual handle extensions extending from the anatomical healing cuff body so that the manufactured anatomical healing cap includes a laterally extending buccal handle extension and an oppositely disposed laterally extending lingual handle extension, the buccal and lingual handle extensions being integrally formed with the healing cuff body. The healing caps can be formed using a casting jig, by machining, by 3D printing, or other suitable methods.