Provided are methods and/or systems having advantages of cost effective, time saving, and informative user-friendly characteristics to accomplish conversion of an elite inbred into a traited plant without losing agronomic performance. The methods provided comprise obtaining a SNP database, analyzing sequences against such SNP database, and predicting the outcome between non-rogue plants and rogue plants. The systems provided comprise a SNP database, a Genotype Imputation Module, and a Marker Study Manager module. The methods and/or systems provided will allow users to calculate a more realistic statistical measure to ensure high quality conversions.
