Systems and methods for providing a micro-taggant based agricultural product tracking system enabled by micro-taggants for agricultural products and industries which identifies, tracks and/or controls a broad variety of agricultural products that are produced, distributed and sold to consumers (e.g., through the supply chain from “seed-to-sale”). Advantageously, the micro-taggant based agricultural product tracking system of the present disclosure enables all participants in one or more agricultural industries, including government regulators, law enforcement officials, producers and licensees, to benefit from vastly improved agricultural product identification and tracking capacity which ultimately results in reducing diversion of agricultural products to the black market and increasing state revenue receipts.