A fluid collection system includes a disposable collection container and a disposable collection container receiving housing, the housing having a cavity and a suction source. The fluid collection container may include a flexible liner and a shelf for diverting fluid from the suction and to assist with a collapse of the liner during evacuation of the fluid from the liner. The collection container receiving housing may include a piston assembly having a main piston body and a scraper ring. The collection container receiving housing may include a piston stop feature. The system may include a partially hydrophobic filter and a flat surface suction tool.