An endoscope system of the invention includes: a first endoscope capable of picking up an image of a subject a first illuminating section capable of emitting first illuminating light a second endoscope capable of picking up an image of the subject illuminated by the first light from a direction different from the first endoscope a second illuminating section capable of emitting second illuminating light a video signal processing section for generating a video signal based on a signal picked-up by the second endoscope a display section for displaying an image of the subject obtained by the video signal processing section an emphasis instructing section for instructing an emphasis on an image obtained based on the first light and an emphasis control section for controlling to emphasize the subject image obtained based on the first light according to an operation of the emphasis instructing section.