A system and method for guiding a capsule medical device. The method includes: changing, by a control unit, a gradient distribution of a gradient magnetic field generated by a magnetic field generator in a vertical direction, the magnetic field generator generating at least the gradient magnetic field in the vertical direction to guide a capsule medical device that includes a magnetic-field responding unit detecting, by a position detector, a position of the capsule medical device in the vertical direction based on a gradient distribution of the gradient magnetic field generated by the magnetic field generator, a physical parameter of the capsule medical device, and a physical parameter of a liquid when the capsule medical device starts to move and setting, by the control unit, the magnetic field generated by the magnetic field generator based on the detected position of the capsule medical device in the vertical direction.
