The present invention is directed to indirect bonding orthodontic brackets to a patients teeth. A geometric index pin is attached to the orthodontic bracket enabling the orthodontic bracket to be precisely held by a plastic tray. A computer program positions the index pin/bracket combination for a patients teeth in a determined position and designs the tray to carry each bracket to the patients tooth in its computer selected position. The index pin eliminates the necessity for the tray material to enclose the bracket which results in a dental tray one third the normal dental tray which saves tray material and reduces the print time of the tray. The ease of removal of the tray from the teeth after placement of the brackets is enhanced by clipping the index pins with a pin cutter.