An active medical apparatus system includes: an active medical apparatus having a joint an active medical apparatus driving section an instruction input section an instruction input section driving section to which information of a force acting on the active medical apparatus is fed back and inputted, and which drives the instruction input section according to the information of force, a determining section which determines whether or not a movement of the instruction input section in the acting direction of the driving force driving the instruction input section is generated in an amount of a threshold value or more and a control section which, when the movement of the instruction input section is generated in the amount of the threshold value or more, suppresses at least one of the driving in the instruction input section driving section and the driving in the active medical apparatus driving section.