A neutron capture therapy system includes a therapy table on which an irradiation target is placed, a neutron beam irradiation unit which irradiates the irradiation target placed on the therapy table with a neutron beam, a position measurement unit which measures a position of the irradiation target placed on the therapy table, and a radiation dose distribution output unit which outputs a radiation dose distribution of a neutron beam used for irradiating the irradiation target, based on an amount of positional misalignment of the position of the irradiation target measured by the position measurement unit.本發明提供一種中子捕獲治療系統及中子捕獲治療用治療計劃系統。本發明的目的在於考慮到照射位置的偏移而進行適當的基於中子捕獲治療之治療。中子捕獲治療系統(1)具備控制部(50),前述控制部(50)作為劑量分佈輸出部而動作,該劑量分佈輸出部係依據位置測定部(40)所測定之患者(S)的位置的位置偏移量來輸出對該患者(S)照射之中子束(N)的劑量分佈。因此,能夠考慮到照射位置的偏移而進行適當的基於中子捕獲治療之治療。又,能夠迅速地輸出考慮到照射位置的偏移之劑量分佈。又,藉由估計實際的劑量分佈,在多向照射的情況下能夠考慮到投與劑量的不足來設定下次的照射條件。又,即使為單向照射的情況下,亦能夠作為治療實績來積蓄準確的資料。