Systems and methods are provided for generating a pseudo-CT prediction model using multi-channel MR images. An exemplary system may include a processor configured to retrieve training data including multiple MR images and at least one CT image for each of a plurality of training subjects. For each training subject, the processor may determine at least one tissue parameter map based on the multiple MR images and obtain CT values based on the at least one CT image. The processor may also generate the pseudo-CT prediction model based on the tissue parameter maps and the CT values of the plurality of training subjects.
