An imaging apparatus sequentially emits, by each illumination period of a length corresponding to at least two frame periods, a plurality of illumination lights in synchronization with start of an exposure period of a horizontal line that is to be read first from the sensor. Here, one frame period is a period from when an exposure period for exposing the pixels on a horizontal line that is to be read first from among the horizontal lines belonging to the read target area of the sensor is started and until when reading of the pixel information generated by each of the pixels on the horizontal line is completed. Then, the imaging apparatus performs a predetermined controlling by performing controlling to exclude, from a predetermined processing target, image data corresponding to the pixel information read by the sensor during a first one frame period of the illumination period, while on the other hand by acquiring image data corresponding to the pixel information read by the sensor during other frame period of the illumination period among the pixel information read by the sensor in each frame.