The invention provides an analysis system for Doppler ultrasound image includes: a capture device, a processing device, and an output device. The capture device obtains a plurality of Doppler ultrasound images. The processing device arranges the color value in each pixel of the images based on the time domain, and obtains a reference sequence through a referencing method, furthermore performs a clustering method to obtain a plurality of correlation coefficient values, then uses a clustering and noise reducing method to classify into a primary pulsatile signal, a secondary pulsatile signal, and a noise signal, finally annotates the primary pulsatile signal, a secondary pulsatile signal, and a noise signal with different color values, respectively. The output device displays a plurality of visualized pulsatile ultrasound images for visualization.